Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs60057029 | chr1:89530245 | A/G | 8.67E-5 | 204 | 16.97 | 18.47 | 9.77 | KM Plot |
| KIRP | rs60070945 | chr1:89523927 | C/T | 9.07E-5 | 204 | 16.47 | 19.92 | 9.77 | KM Plot |
| KIRP | rs60160868 | chr1:89530584 | G/T | 2.43E-5 | 207 | 16.97 | 18.25 | 10.23 | KM Plot |
| KIRP | rs60164048 | chr10:75046929 | G/T | 4.52E-12 | 214 | 16.53 | 11.77 | 5.6 | KM Plot |
| KIRP | rs60212594 | chr10:75414344 | G/C | 4.91E-6 | 212 | 16.47 | 15.07 | 5.38 | KM Plot |
| KIRP | rs60231018 | chr19:16530143 | G/A | 4.71E-11 | 211 | 16.5 | 13.03 | 8.08 | KM Plot |
| KIRP | rs60244599 | chr5:79926427 | C/T | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
| KIRP | rs60247651 | chr3:50272953 | T/A | 0.000135 | 211 | 16.43 | 19.5 | 7.13 | KM Plot |
| KIRP | rs603272 | chr6:4190172 | C/T | 8.47E-5 | 214 | 14.47 | 18.67 | 12.38 | KM Plot |
| KIRP | rs60332249 | chr10:74972535 | C/CAT | 5.79E-12 | 212 | 16.97 | 9.05 | 5.6 | KM Plot |
| KIRP | rs60365066 | chr19:16523589 | G/A | 4.71E-11 | 211 | 16.5 | 13.03 | 8.08 | KM Plot |
| KIRP | rs6037225 | chr20:25718021 | A/T | 1.08E-8 | 213 | 16.43 | 15.88 | 4.5 | KM Plot |
| KIRP | rs6037230 | chr20:25723766 | C/G | 5.62E-9 | 214 | 16.43 | 15.05 | 4.5 | KM Plot |
| KIRP | rs6037314 | chr20:25978572 | A/G | 8.45E-9 | 208 | 17.62 | 13.13 | 4.73 | KM Plot |
| KIRP | rs60465505 | chr10:63364898 | T/C | 0 | 214 | 18.25 | 10.23 | 1.17 | KM Plot |